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Dadun > Depósito Académico > Facultad de Ciencias > Departamento de Histología y Anatomía Patológica > DA - Ciencias - HAP - Artículos de revista >

Identification of importin (IPO-8) as the most accurate reference gene for the clinicopathological analysis of lung specimens
Autor(es) : Nguewa, P.A. (Paul Alain)
Agorreta, J. (Jackeline)
Blanco, D. (D.)
Lozano, M.D. (María Dolores)
Gomez-Roman, J. (J.)
Sanchez, B.A. (Blas A.)
Valles, I. (Iñaki)
Pajares, M.J. (María José)
Pio, R. (Rubén)
Rodriguez, M.J. (María José)
Montuenga, L.M. (Luis M.)
Calvo, A. (Alfonso)
Palabras clave : Identification
Lung specimens
IPO-8
The most accurate reference gene
Clinicopathological analysis
Fecha incorporación: 17-nov-2008
Editorial : BioMed Central
Versión del editor: http://dx.doi.org/10.1186/1471-2199-9-103
ISSN: 1471-2199
Cita: Nguewa PA, Agorreta J, Blanco D, Lozano MD, Gomez-Roman J, Sanchez BA, et al. Identification of importin 8 (IPO8) as the most accurate reference gene for the clinicopathological analysis of lung specimens. BMC Mol Biol 2008 Nov 17;9:103.
Resumen
Abstract Background: The accurate normalization of differentially expressed genes in lung cancer is essential for the identification of novel therapeutic targets and biomarkers by real time RT-PCR and microarrays. Although classical "housekeeping" genes, such as GAPDH, HPRT1, and beta-actin have been widely used in the past, their accuracy as reference genes for lung tissues has not been proven. Results: We have conducted a thorough analysis of a panel of 16 candidate reference genes for lung specimens and lung cell lines. Gene expression was measured by quantitative real time RTPCR and expression stability was analyzed with the softwares GeNorm and NormFinder, mean of |ΔCt| (= |Ct Normal-Ct tumor|) ± SEM, and correlation coefficients among genes. Systematic comparison between candidates led us to the identification of a subset of suitable reference genes for clinical samples: IPO8, ACTB, POLR2A, 18S, and PPIA. Further analysis showed that IPO8 had a very low mean of |ΔCt| (0.70 ± 0.09), with no statistically significant differences between normal and malignant samples and with excellent expression stability. Conclusion: Our data show that IPO8 is the most accurate reference gene for clinical lung specimens. In addition, we demonstrate that the commonly used genes GAPDH and HPRT1 are inappropriate to normalize data derived from lung biopsies, although they are suitable as reference genes for lung cell lines. We thus propose IPO8 as a novel reference gene for lung cancer samples.
Enlace permanente: http://hdl.handle.net/10171/13592
Aparece en las colecciones: DA - CIMA - Oncología - Nuevas dianas terapéuticas - Artículos de revista
DA - CIMA - Oncología - Biomarcadores - Artículos de Revista
DA - Ciencias - HAP - Artículos de revista

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