Algorithms Database Management Systems Documentation Gene Expression Profiling/methods Information Storage and Retrieval/methods Oligonucleotide Array Sequence Analysis/methods Proteomics/methods Software
Oxford University Press
Martinez-Cruz LA, Rubio A, Martinez-Chantar ML, Labarga A, Barrio I, Podhorski A, et al. GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data. Bioinformatics 2003 Nov 1;19(16):2158-2160.
Genomic Analysis and Rapid Biological ANnotation (GARBAN) is a new tool that provides an integrated framework to analyze simultaneously and compare multiple data sets derived from microarray or proteomic experiments. It carries out automated classifications of genes or proteins according to the criteria of the Gene Ontology Consortium at a level of depth defined by the user. Additionally, it performs clustering analysis of all sets based on functional categories or on differential expression levels. GARBAN also provides graphical representations of the biological pathways in which all the genes/proteins participate. AVAILABILITY: http://garban.tecnun.es.