GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data

Martinez-Cruz, L.A. (L. Alfonso); Rubio, A. (Ángel); Martinez-Chantar, M.L. (María Luz); Labarga, A. (Alberto); Barrio, I. (Isabel); Podhorski, A. (Adam); Segura, V. (Víctor); Sevilla, J.L. (José L.); Avila, M.A. (Matías Antonio); Mato, J.M. (José María)

Keywords:

Algorithms
Database Management Systems
Documentation
Gene Expression Profiling/methods
Information Storage and Retrieval/methods
Oligonucleotide Array Sequence Analysis/methods
Proteomics/methods
Software

Issue Date:

2003

Publisher:

Oxford University Press

Publisher Version:

http://bioinformatics.oxfordjournals.org/content/19/16/2158

ISSN:

1367-4811

Citation:

Martinez-Cruz LA, Rubio A, Martinez-Chantar ML, Labarga A, Barrio I, Podhorski A, et al. GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data. Bioinformatics 2003 Nov 1;19(16):2158-2160.

Abstract

Genomic Analysis and Rapid Biological ANnotation (GARBAN) is a new tool that provides an integrated framework to analyze simultaneously and compare multiple data sets derived from microarray or proteomic experiments. It carries out automated classifications of genes or proteins according to the criteria of the Gene Ontology Consortium at a level of depth defined by the user. Additionally, it performs clustering analysis of all sets based on functional categories or on differential expression levels. GARBAN also provides graphical representations of the biological pathways in which all the genes/proteins participate. AVAILABILITY: http://garban.tecnun.es.

URI:

https://hdl.handle.net/10171/23230

Appears in Collections:

DA - CIMA - Hepatología - Hepatología bioquímica - Artículos de revista

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